Stem-loop mdo-mir-141

Accession

MI0005340

Description

Monodelphis domestica mdo-mir-141 precursor miRNA

Sequence

9766 reads, 164.0 reads per million, 5 experiments

uggggCCAUCUUCCAGUACAGUGGUGGAUggugaagcuucUAACACUGUCUGGUAAAGAUGCCc
..((((.(((((((((.((((((..(((.(......).)))..))))))))))..)))))))))

Structure

ug    C     --    U      GU   U gu 
  gggC AUCUU  CCAG ACAGUG  GGA g  g
  |||| |||||  |||| ||||||  ||| |   
  cCCG UAGAA  GGUC UGUCAC  Ucu c  a
--    -     AU    -      AA   u ga 

Annotation confidence High

Genome context

ref|NC_077234.2|: 121159870-121159933 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mdo-mir-141

Mature mdo-miR-141-5p

• Accession: MIMAT0026695
• Description: Monodelphis domestica mdo-miR-141-5p mature miRNA
• Sequence: 6 - CCAUCUUCCAGUACAGUGGUGGAU - 29
• Evidence: experimental ; Illumina [2]

Mature mdo-miR-141-3p

• Accession: MIMAT0004151
• Description: Monodelphis domestica mdo-miR-141-3p mature miRNA
• Sequence: 41 - UAACACUGUCUGGUAAAGAUGCC - 63
• Evidence: experimental ; PCR [1], Illumina [2]

References

1. PubMed ID: 17965199
   In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
   "Devor EJ, Samollow PB"
   "J Hered (2008) 99:66-72


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45