Stem-loop api-mir-8

Accession

MI0013939

Description

Acyrthosiphon pisum api-mir-8 precursor miRNA

Literature search

8 open access papers mention api-mir-8
(26 sentences)

Sequence

144352 reads, 3931.0 reads per million, 6 experiments

CGUCUUACUUGGGCAGGAUUAGAgugacaauugauaugucUAAUACUGUCAGGUAAUGAUGUC
((((((((((((.(((..(((((...............)))))..))))))))))).))))..

Structure

--    -        G   GA     gugaca 
  CGUC UUACUUGG CAG  UUAGA      a
  |||| |||||||| |||  |||||      u
  GUAG AAUGGACU GUC  AAUcu      u
CU    U        -   AU     guauag 

Annotation confidence High

Genome context

GL349795.1: 1044256-1044318 [-]

Mature api-miR-8-5p

• Accession: MIMAT0057288
• Description: Acyrthosiphon pisum api-miR-8-5p mature miRNA
• Sequence: 1 - CGUCUUACUUGGGCAGGAUUAGA - 23
• Evidence: experimental ; Illumina [1]

Mature api-miR-8-3p

• Accession: MIMAT0014737
• Description: Acyrthosiphon pisum api-miR-8-3p mature miRNA
• Sequence: 41 - UAAUACUGUCAGGUAAUGAUGUC - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20444247
   Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum
   Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Méreau A, Nicolas J, Tagu D, Jaubert-Possamai S
   BMC Genomics (2010) 11:281