Stem-loop eca-mir-141

Accession

MI0012723

Description

Equus caballus eca-mir-141 precursor miRNA

Literature search

6 open access papers mention eca-mir-141
(24 sentences)

Sequence

891040 reads, 1778.0 reads per million, 192 experiments

gggucCAUCUUCCAGUACAGUGUUGGAUGGucuaauugugaagcuccUAACACUGUCUGGUAAAGAUGGccc
(((.(((((((((((.(((((((((((...((.......))...))).))))))))))))..))))))))))

Structure

   u       --    U        -   UGG  ua 
ggg cCAUCUU  CCAG ACAGUGUU GGA   uc  a
||| |||||||  |||| |||||||| |||   ||  u
ccc GGUAGAA  GGUC UGUCACAA ccu   ag  u
   -       AU    -        U   cga  ug 

Annotation confidence High

Genome context

6: 35439079-35439150 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from eca-mir-141

Mature eca-miR-141-5p

• Accession: MIMAT0051356
• Description: Equus caballus eca-miR-141-5p mature miRNA
• Sequence: 6 - CAUCUUCCAGUACAGUGUUGGAUGG - 30
• Evidence: not_experimental

Mature eca-miR-141-3p

• Accession: MIMAT0012970
• Description: Equus caballus eca-miR-141-3p mature miRNA
• Sequence: 48 - UAACACUGUCUGGUAAAGAUGG - 69
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131