Stem-loop mmu-mir-429

Accession

MI0001642

Symbol

MGI: Mir429

Description

Mus musculus mmu-mir-429 precursor miRNA

Gene family

MIPF0000019; mir-8

Literature search

80 open access papers mention mmu-mir-429
(228 sentences)

Sequence

75684 reads, 420 reads per million, 92 experiments

ccugcugauggauGUCUUACCAGACAUGGUUAGAucuggaugcaucugucUAAUACUGUCUGGUAAUGCCGUccauccacggc
.(((..((((((((.(((((((((((..(((((((..(((....))))))))))..)))))))))).).))))))))..))).

Structure

c   cu        U -          UG       cu   u 
 cug  gauggauG C UUACCAGACA  GUUAGAu  gga g
 |||  |||||||| | ||||||||||  |||||||  |||  
 ggc  cuaccUGC G AAUGGUCUGU  UAAUcug  ucu c
c   ac        C U          CA       --   a 

Annotation confidence High

Comments

Xie et al. [1] refer to this sequence by the internal identifier MIR201. The sequence is unrelated to mouse mir-201 (MIR:MI0000244).

Genome context

chr4: 156053905-156053987 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from mmu-mir-429

Mature mmu-miR-429-5p

• Accession: MIMAT0017178
• Description: Mus musculus mmu-miR-429-5p mature miRNA
• Sequence: 14 - GUCUUACCAGACAUGGUUAGA - 34
• Evidence: experimental ; Illumina [4]

Mature mmu-miR-429-3p

• Accession: MIMAT0001537
• Description: Mus musculus mmu-miR-429-3p mature miRNA
• Sequence: 51 - UAAUACUGUCUGGUAAUGCCGU - 72
• Evidence: experimental ; cloned [2], Illumina [3-4]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20215419
   MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
   "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
   "Mol Hum Reprod (2010) 16:463-471


3. PubMed ID: 20413612
   Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
   "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
   "Genes Dev (2010) 24:992-1009


4. PubMed ID: 15735639
   Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals
   "Xie X, Lu J, Kulbokas EJ, Golub TR, Mootha V, Lindblad-Toh K, Lander ES, Kellis M"
   "Nature (2005) 434:338-345