Stem-loop chi-mir-200b

Accession

MI0030680

Description

Capra hircus chi-mir-200b precursor miRNA

Literature search

86 open access papers mention chi-mir-200b
(230 sentences)

Sequence

310302 reads, 1036.0 reads per million, 36 experiments

gccaucgcCAUCUUACUGGGCAGCAUUGGAUGGugucuggucucUAAUACUGCCUGGUAAUGAUGAcgcuggggcccugc
.(((.((.(((((((((((((((.((((((.((.......)))))))).))))))))))).)))).)).)))........

Structure

-------g   u  c    -           C      U  ug 
        cca cg CAUC UUACUGGGCAG AUUGGA GG  u
        ||| || |||| ||||||||||| |||||| ||  c
        ggu gc GUAG AAUGGUCCGUC UAAUcu cu  u
cgucccgg   c  A    U           A      -  gg 

Annotation confidence High

Genome context

chr16: 51960891-51960970 [-]

Mature chi-miR-200b-5p

• Accession: MIMAT0058951
• Description: Capra hircus chi-miR-200b-5p mature miRNA
• Sequence: 9 - CAUCUUACUGGGCAGCAUUGGAUGG - 33
• Evidence: experimental ; Illumina [1]

Mature chi-miR-200b-3p

• Accession: MIMAT0036046
• Description: Capra hircus chi-miR-200b-3p mature miRNA
• Sequence: 45 - UAAUACUGCCUGGUAAUGAUGA - 66
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40