Stem-loop tni-mir-200b

Accession

MI0003306

Description

Tetraodon nigroviridis tni-mir-200b precursor miRNA

Gene family

MIPF0000019; mir-8

Sequence

ccaucuuacgaggcagcauuggauagcaucacuuuuucUAAUACUGCCUGGUAAUGAUGAugaucgucgucugcagg
.((((((((.((((((.((((((.............)))))).)))))).)))).))))..................

Structure

-----------------c    -    g      c      uagca 
                  cauc uuac aggcag auugga     u
                  |||| |||| |||||| ||||||     c
                  GUAG AAUG UCCGUC UAAUcu     a
ggacgucugcugcuaguA    U    G      A      uuuuc 

Annotation confidence Not enough data

Comments

This Tetraodon miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

Un_random: 2991281-2991357 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from tni-mir-200b

Mature tni-miR-200b

• Accession: MIMAT0002984
• Description: Tetraodon nigroviridis tni-miR-200b mature miRNA
• Sequence: 39 - UAAUACUGCCUGGUAAUGAUGA - 60
• Evidence: not_experimental

References