Stem-loop xtr-mir-200a

Accession

MI0004945

Description

Xenopus tropicalis xtr-mir-200a precursor miRNA

Literature search

4 open access papers mention xtr-mir-200a
(10 sentences)

Sequence

4403 reads, 499.0 reads per million, 4 experiments

ugguccucuauggaCAUCUUACUAGACAGUGCUGGauuuauuuuaucuuuucUAACACUGUCUGGUAACGAUGUuuaaagagugagcca
(((((((((.(((((((((((((((((((((.((((..............)))).))))))))))))).)))))))).)))).)).)))

Structure

   -  -    a        -             C    uuuauu 
ugg uc cucu uggaCAUC UUACUAGACAGUG UGGa      u
||| || |||| |||||||| ||||||||||||| ||||       
acc ag gaga auuUGUAG AAUGGUCUGUCAC AUcu      u
   g  u    a        C             A    uuucua 

Annotation confidence High

Genome context

7: 87890107-87890195 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from xtr-mir-200a

Mature xtr-miR-200a-5p

• Accession: MIMAT0052169
• Description: Xenopus tropicalis xtr-miR-200a-5p mature miRNA
• Sequence: 15 - CAUCUUACUAGACAGUGCUGG - 35
• Evidence: experimental ; Northern [1]

Mature xtr-miR-200a-3p

• Accession: MIMAT0003693
• Description: Xenopus tropicalis xtr-miR-200a-3p mature miRNA
• Sequence: 53 - UAACACUGUCUGGUAACGAUGU - 74
• Evidence: experimental ; Northern [1]

References

1. PubMed ID: 18032731
   Xenopus microRNA genes are predominantly located within introns and are differentially expressed in adult frog tissues via post-transcriptional regulation
   "Tang GQ, Maxwell ES"
   "Genome Res (2008) 18:104-112