Stem-loop xtr-mir-200a

Accession

MI0004945

Description

Xenopus tropicalis xtr-mir-200a precursor miRNA

Gene family

MIPF0000019; mir-8

Sequence

ugguccucuauggacaucuuacuagacagugcuggauuuauuuuaucuuuucUAACACUGUCUGGUAACGAUGUuuaaagagugagcca
(((((((((.(((((((((((((((((((((.((((..............)))).))))))))))))).)))))))).)))).)).)))

Structure

   -  -    a        -             c    uuuauu 
ugg uc cucu uggacauc uuacuagacagug ugga      u
||| || |||| |||||||| ||||||||||||| ||||       
acc ag gaga auuUGUAG AAUGGUCUGUCAC AUcu      u
   g  u    a        C             A    uuucua 

Annotation confidence Not enough data

Genome context

chr7: 78800601-78800689 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from xtr-mir-200a

Mature xtr-miR-200a

• Accession: MIMAT0003693
• Description: Xenopus tropicalis xtr-miR-200a mature miRNA
• Sequence: 53 - UAACACUGUCUGGUAACGAUGU - 74
• Evidence: experimental ; Northern [1]

References

1. PubMed ID: 18032731
   Xenopus microRNA genes are predominantly located within introns and are differentially expressed in adult frog tissues via post-transcriptional regulation
   "Tang GQ, Maxwell ES"
   "Genome Res (2008) 18:104-112