Stem-loop fru-mir-200b

Accession

MI0003305

Description

Fugu rubripes fru-mir-200b precursor miRNA

Literature search

2 open access papers mention fru-mir-200b
(3 sentences)

Sequence

330014 reads, 4735.0 reads per million, 12 experiments

ggugauuaucucCAUCUUACGAGGCAGCAUUGGAUaucaucacuuucucUAAUACUGCCUGGUAAUGAUGAugaucg
...(((((((..(((..(((.((((((.((((((.............)))))).)))))).))))))..))))))).

Structure

ggu       uc   CU   G      C      Uauca 
   gauuauc  CAU  UAC AGGCAG AUUGGA     u
   |||||||  |||  ||| |||||| ||||||     c
   cuaguAG  GUA  AUG UCCGUC UAAUcu     a
--g       UA   --   G      A      cuuuc 

Annotation confidence High

Comments

This Fugu miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

ref|NC_042287.1|: 3944908-3944984 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from fru-mir-200b

Mature fru-miR-200b-5p

• Accession: MIMAT0052860
• Description: Fugu rubripes fru-miR-200b-5p mature miRNA
• Sequence: 13 - CAUCUUACGAGGCAGCAUUGGAU - 35
• Evidence: not_experimental

Mature fru-miR-200b-3p

• Accession: MIMAT0002983
• Description: Fugu rubripes fru-miR-200b-3p mature miRNA
• Sequence: 50 - UAAUACUGCCUGGUAAUGAUGA - 71
• Evidence: not_experimental

References