Stem-loop fru-mir-200b

Accession

MI0003305

Description

Fugu rubripes fru-mir-200b precursor miRNA

Sequence

ggugauuaucuccaucuuacgaggcagcauuggauaucaucacuuucucUAAUACUGCCUGGUAAUGAUGAugaucg
...(((((((..(((..(((.((((((.((((((.............)))))).)))))).))))))..))))))).

Structure

ggu       uc   cu   g      c      uauca 
   gauuauc  cau  uac aggcag auugga     u
   |||||||  |||  ||| |||||| ||||||     c
   cuaguAG  GUA  AUG UCCGUC UAAUcu     a
--g       UA   --   G      A      cuuuc 

Annotation confidence Not enough data

Comments

This Fugu miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

HE602537.1: 1332580-1332656 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from fru-mir-200b

Mature fru-miR-200b

• Accession: MIMAT0002983
• Description: Fugu rubripes fru-miR-200b mature miRNA
• Sequence: 50 - UAAUACUGCCUGGUAAUGAUGA - 71
• Evidence: not_experimental

References