Stem-loop efu-mir-429

Accession

MI0028699

Description

Eptesicus fuscus efu-mir-429 precursor miRNA

Sequence

57784 reads, 524.0 reads per million, 8 experiments

ugugaugggcGUCUUACCAGACACGGUUAGAccuggguccuucuguCUAAUACUGUCUGGUAAUGCCGUccauccacgg
(((((((((((.(((((((((((..(((((((..(((....))))))))))..)))))))))).).))))))).)))).

Structure

-    -       U -          CG       cu   u 
 ugug augggcG C UUACCAGACA  GUUAGAc  ggg c
 |||| ||||||| | ||||||||||  |||||||  |||  
 gcac uaccUGC G AAUGGUCUGU  UAAUCug  ucu c
g    c       C U          CA       --   u 

Annotation confidence High

Genome context

JH977681.1: 209798-209876 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from efu-mir-429

Mature efu-miR-429-5p

• Accession: MIMAT0058809
• Description: Eptesicus fuscus efu-miR-429-5p mature miRNA
• Sequence: 11 - GUCUUACCAGACACGGUUAGA - 31
• Evidence: experimental ; Illumina [1]

Mature efu-miR-429-3p

• Accession: MIMAT0035014
• Description: Eptesicus fuscus efu-miR-429-3p mature miRNA
• Sequence: 47 - CUAAUACUGUCUGGUAAUGCCGU - 69
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545