Stem-loop dre-mir-200c

Accession

MI0002039

Description

Danio rerio dre-mir-200c precursor miRNA

Gene family

MIPF0000019; mir-8

Literature search

18 open access papers mention dre-mir-200c
(205 sentences)

Sequence

11499 reads, 1047 reads per million, 11 experiments

uggaugccuggcucCAUCUUACAAGGCAGUUUUGGAuguuauaucuucucUAAUACUGCCUGGUAAUGAUGCagauggucaucua
((((((.((..((.((((((((.(((((((.(((((............))))).))))))).)))).)))).))..)).))))))

Structure

      c  gg  c    -    A       U     uguua 
uggaug cu  cu CAUC UUAC AGGCAGU UUGGA     u
|||||| ||  || |||| |||| ||||||| |||||      
aucuac gg  ga GUAG AAUG UCCGUCA AAUcu     a
      u  ua  C    U    G       U     cuucu 

Annotation confidence High

Genome context

chr6: 40656204-40656288 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from dre-mir-200c

Mature dre-miR-200c-3p

• Accession: MIMAT0001863
• Description: Danio rerio dre-miR-200c-3p mature miRNA
• Sequence: 51 - UAAUACUGCCUGGUAAUGAUGC - 72
• Evidence: experimental ; cloned [1]

Mature dre-miR-200c-5p

• Accession: MIMAT0031986
• Description: Danio rerio dre-miR-200c-5p mature miRNA
• Sequence: 15 - CAUCUUACAAGGCAGUUUUGGA - 36
• Evidence: not_experimental

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293