Stem-loop ggo-mir-200b

Accession

MI0020847

Description

Gorilla gorilla ggo-mir-200b precursor miRNA

Literature search

1 open access papers mention ggo-mir-200b
(1 sentences)

Sequence

179 reads, 14.0 reads per million, 3 experiments

cggcccccggacccagcucgggcagccguggcCAUCUUACUGGGCAGCAUUGGAuggagucaggucucUAAUACUGCCUGGUAAUGAUGACggcggagcccugcacgcagc
.((((...)).))..((..((((..((((.(.(((((((((((((((.((((((..((......)))))))).))))))))))).)))).).)))).)))).)).......

Structure

cggcccccggaccca  uc    ag    g c    -           C      ug  gu 
               gc  gggc  ccgu g CAUC UUACUGGGCAG AUUGGA  ga  c
               ||  ||||  |||| | |||| ||||||||||| ||||||  ||   
               cg  cccg  ggcg C GUAG AAUGGUCCGUC UAAUcu  cu  a
--------cgacgca  -u    -a    g A    U           A      --  gg 

Annotation confidence Medium

Genome context

chr1: 808769-808879 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ggo-mir-200b

Mature ggo-miR-200b-5p

• Accession: MIMAT0061351
• Description: Gorilla gorilla ggo-miR-200b-5p mature miRNA
• Sequence: 33 - CAUCUUACUGGGCAGCAUUGGA - 54
• Evidence: experimental ; Illumina [1]

Mature ggo-miR-200b-3p

• Accession: MIMAT0024299
• Description: Gorilla gorilla ggo-miR-200b-3p mature miRNA
• Sequence: 69 - UAAUACUGCCUGGUAAUGAUGAC - 91
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22453055
   Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
   "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
   "BMC Genomics (2012) 13:116