Stem-loop eca-mir-429

Accession

MI0012675

Description

Equus caballus eca-mir-429 precursor miRNA

Literature search

11 open access papers mention eca-mir-429
(13 sentences)

Sequence

358442 reads, 933.0 reads per million, 195 experiments

gggcGUCUUACCAGACACGGUUAGAUcugcguccuucugucUAAUACUGUCUGGUAAUGCCGUccau
(((((.(((((((((((..(((((((............)))))))..)))))))))).).)))))..

Structure

--     U -          CG       cugcg 
  gggcG C UUACCAGACA  GUUAGAU     u
  ||||| | ||||||||||  |||||||      
  ccUGC G AAUGGUCUGU  UAAUcug     c
ua     C U          CA       ucuuc 

Annotation confidence High

Genome context

2: 48712423-48712489 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from eca-mir-429

Mature eca-miR-429-5p

• Accession: MIMAT0061139
• Description: Equus caballus eca-miR-429-5p mature miRNA
• Sequence: 5 - GUCUUACCAGACACGGUUAGAU - 26
• Evidence: experimental ; Illumina [1]

Mature eca-miR-429-3p

• Accession: MIMAT0012919
• Description: Equus caballus eca-miR-429-3p mature miRNA
• Sequence: 42 - UAAUACUGUCUGGUAAUGCCGU - 63
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131