miRBase entry: cfa-mir-200c

Stem-loop cfa-mir-200c

Accession

MI0008070

Description

Canis familiaris cfa-mir-200c precursor miRNA

Sequence

cgucuuacccagcaguguuugggugcugguugggagucucUAAUACUGCCGGGUAAUGAUGGA
((((((((((.((((((((.(((.(((.......)))))).)))))))).)))))).))))..

Structure

--    -      a        u   u   gg 
  cguc uuaccc gcaguguu ggg gcu  u
  |||| |||||| |||||||| ||| |||  u
  GUAG AAUGGG CGUCAUAA cuc uga  g
AG    U      C        U   -   gg

Annotation confidence Not enough data

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Genome context

chr27: 38082097-38082159 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cfa-mir-200c

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cfa-miR-200c

Accession	MIMAT0006664
Description	Canis familiaris cfa-miR-200c mature miRNA
Sequence	41 - UAAUACUGCCGGGUAAUGAUGGA - 63
Evidence	experimental Illumina [1]

References

PubMed ID: 18392026
Discovering microRNAs from deep sequencing data using miRDeep
"Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
"Nat Biotechnol (2008) 26:407-415