Stem-loop cfa-mir-200c

Accession

MI0008070

Description

Canis lupus familiaris cfa-mir-200c precursor miRNA

Literature search

7 open access papers mention cfa-mir-200c
(9 sentences)

Sequence

274017 reads, 930.0 reads per million, 77 experiments

CGUCUUACCCAGCAGUGUUUGGgugcugguugggagucucUAAUACUGCCGGGUAAUGAUGGA
((((((((((.((((((((.(((.(((.......)))))).)))))))).)))))).))))..

Structure

--    -      A        U   u   gg 
  CGUC UUACCC GCAGUGUU GGg gcu  u
  |||| |||||| |||||||| ||| |||  u
  GUAG AAUGGG CGUCAUAA cuc uga  g
AG    U      C        U   -   gg 

Annotation confidence High

Genome context

27: 38434697-38434759 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cfa-mir-200c

Mature cfa-miR-200c-5p

• Accession: MIMAT0051781
• Description: Canis lupus familiaris cfa-miR-200c-5p mature miRNA
• Sequence: 1 - CGUCUUACCCAGCAGUGUUUGG - 22
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-200c-3p

• Accession: MIMAT0006664
• Description: Canis lupus familiaris cfa-miR-200c-3p mature miRNA
• Sequence: 41 - UAAUACUGCCGGGUAAUGAUGGA - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415