Stem-loop bta-mir-200a

Accession

MI0005037

Description

Bos taurus bta-mir-200a precursor miRNA mir-8

Gene
family

RF00241; mir-8

Literature search

20 open access papers mention bta-mir-200a
(55 sentences)

Sequence

46598 reads, 1011 reads per million, 77 experiments

gggccucuguggacaucuuaccggacagugcuggauuucucggcucgacucUAACACUGUCUGGUAACGAUGUUcaaaggugaccc
((((.(((.(((((((((((((((((((((.((((....(((...))).)))).))))))))))))).)))))))).))).).)))

Structure

   - c   g        -             c    uuuc   g 
ggg c ucu uggacauc uuaccggacagug ugga    ucg  
||| | ||| |||||||| ||||||||||||| ||||    ||| c
ccc g gga acUUGUAG AAUGGUCUGUCAC AUcu    agc  
   a u   a        C             A    ---c   u 

Annotation confidence High

Genome context

chr16: 52694578-52694663 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from bta-mir-200a

Mature bta-miR-200a

• Accession: MIMAT0003822
• Description: Bos taurus bta-miR-200a mature miRNA
• Sequence: 52 - UAACACUGUCUGGUAACGAUGUU - 74
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17105755
   Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
   "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
   "Physiol Genomics (2007) 29:35-43