Stem-loop bta-mir-200c

Accession

MI0005038

Description

Bos taurus bta-mir-200c precursor miRNA

Literature search

212 open access papers mention bta-mir-200c
(962 sentences)

Sequence

3242652 reads, 1319.0 reads per million, 313 experiments

CGUCUUACCCAGCAGUGUUUGGgugcugguugggagucucUAAUACUGCCGGGUAAUGAUGGAgg
((((((((((.((((((((.(((.(((.......)))))).)))))))).)))))).))))....

Structure

----    -      A        U   u   gg 
    CGUC UUACCC GCAGUGUU GGg gcu  u
    |||| |||||| |||||||| ||| |||  u
    GUAG AAUGGG CGUCAUAA cuc uga  g
ggAG    U      C        U   -   gg 

Annotation confidence High

Genome context

5: 103499257-103499321 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from bta-mir-200c

Mature bta-miR-200c-5p

• Accession: MIMAT0060960
• Description: Bos taurus bta-miR-200c-5p mature miRNA
• Sequence: 1 - CGUCUUACCCAGCAGUGUUUGG - 22
• Evidence: experimental ; cloned [1], Array [2], qRT-PCR [2]

Mature bta-miR-200c-3p

• Accession: MIMAT0003823
• Description: Bos taurus bta-miR-200c-3p mature miRNA
• Sequence: 41 - UAAUACUGCCGGGUAAUGAUGGA - 63
• Evidence: experimental ; cloned [1], Array [2], qRT-PCR [2]

References

1. PubMed ID: 17105755
   Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
   "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
   "Physiol Genomics (2007) 29:35-43


2. PubMed ID: 19170227
   Identification and expression profiling of microRNAs during bovine oocyte maturation using heterologous approach
   "Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker M"
   "Mol Reprod Dev (2009) 76:665-677