Stem-loop bbe-mir-200b

Accession

MI0026196

Description

Branchiostoma belcheri bbe-mir-200b precursor miRNA

Literature search

1 open access papers mention bbe-mir-200b
(1 sentences)

Sequence

281294 reads, 2396.0 reads per million, 16 experiments

acaguuuaggaucucggcaaCAUCUUACCAGGCAGCAUUUAGuuuuugaaaggaauacUAAUACUGUCUGGUAAUGAUGuuggugggguucagacagu
...((((.((((((((.((((((((((((((((((...(((((.(((.....))).)))))..))))))))))).))))))).))))))))))))...

Structure

aca    a        g       -           CAU     u   g 
   guuu ggaucucg caaCAUC UUACCAGGCAG   UUAGu uuu a
   |||| |||||||| ||||||| |||||||||||   ||||| ||| a
   caga cuuggggu guuGUAG AAUGGUCUGUC   AAUca aag a
uga    -        g       U           -AU     u   g 

Annotation confidence High

Genome context

Unknown

Mature bbe-miR-200b-5p

• Accession: MIMAT0031609
• Description: Branchiostoma belcheri bbe-miR-200b-5p mature miRNA
• Sequence: 21 - CAUCUUACCAGGCAGCAUUUAG - 42
• Evidence: not_experimental

Mature bbe-miR-200b-3p

• Accession: MIMAT0031608
• Description: Branchiostoma belcheri bbe-miR-200b-3p mature miRNA
• Sequence: 59 - UAAUACUGUCUGGUAAUGAUG - 79
• Evidence: not_experimental

References

1. PubMed ID: 23335747
   Genome-wide analyses of amphioxus microRNAs reveal an immune regulation via miR-92d targeting C3
   "Yang R, Zheng T, Cai X, Yu Y, Yu C, Guo L, Huang S, Zhu W, Zhu R, Yan Q, Ren Z, Chen S, Xu A"
   "J Immunol (2013) 190:1491-1500