Stem-loop cfa-mir-429

Accession

MI0001644

Description

Canis lupus familiaris cfa-mir-429 precursor miRNA

Literature search

4 open access papers mention cfa-mir-429
(7 sentences)

Sequence

82113 reads, 384.0 reads per million, 67 experiments

agccugcugaugggcgucuuaccagacacgguuagaucuggguucuggugucUAAUACUGUCUGGUAAUGCCGUucauccauggc
.(((....((((((((.(((((((((((..(((((((((((...)))).)))))))..)))))))))).).))))))))...)))

Structure

a   ugcu        u -          cg       -    g 
 gcc    gaugggcg c uuaccagaca  guuagau cugg  
 |||    |||||||| | ||||||||||  ||||||| |||| u
 cgg    cuacuUGC G AAUGGUCUGU  UAAUcug gguc  
-   -uac        C U          CA       u    u 

Annotation confidence Not enough data

Comments

Xie et al. [1] refer to this sequence by the internal identifier MIR201. The sequence is unrelated to mouse mir-201 (MIR:MI0000244).

Genome context

5: 56573406-56573490 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from cfa-mir-429

Mature cfa-miR-429-3p

• Accession: MIMAT0001539
• Description: Canis lupus familiaris cfa-miR-429-3p mature miRNA
• Sequence: 53 - UAAUACUGUCUGGUAAUGCCGU - 74
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15735639
   Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals
   "Xie X, Lu J, Kulbokas EJ, Golub TR, Mootha V, Lindblad-Toh K, Lander ES, Kellis M"
   "Nature (2005) 434:338-345