Stem-loop chi-mir-200c

Accession

MI0030681

Description

Capra hircus chi-mir-200c precursor miRNA

Literature search

110 open access papers mention chi-mir-200c
(664 sentences)

Sequence

40598 reads, 124.0 reads per million, 36 experiments

gggugggggcccuCGUCUUACCCAGCAGUGUUUGGgugcugguugggagucucUAAUACUGCCGGGUAAUGAUGGAggccccuguc
....(((((((.(((((((((((.((((((((.(((.(((.......)))))).)))))))).)))))).))))).)))))))...

Structure

gggu       c     -      A        U   u   gg 
    gggggcc uCGUC UUACCC GCAGUGUU GGg gcu  u
    ||||||| ||||| |||||| |||||||| ||| |||  u
    uccccgg GGUAG AAUGGG CGUCAUAA cuc uga  g
-cug       A     U      C        U   -   gg 

Annotation confidence High

Genome context

chr5: 104155533-104155618 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from chi-mir-200c

Mature chi-miR-200c-5p

• Accession: MIMAT0058952
• Description: Capra hircus chi-miR-200c-5p mature miRNA
• Sequence: 14 - CGUCUUACCCAGCAGUGUUUGG - 35
• Evidence: experimental ; Illumina [1]

Mature chi-miR-200c-3p

• Accession: MIMAT0036047
• Description: Capra hircus chi-miR-200c-3p mature miRNA
• Sequence: 54 - UAAUACUGCCGGGUAAUGAUGGA - 76
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40