Stem-loop aca-mir-200a

Accession

MI0018802

Description

Anolis carolinensis aca-mir-200a precursor miRNA

Literature search

1 open access papers mention aca-mir-200a
(3 sentences)

Sequence

12265 reads, 4269.0 reads per million, 2 experiments

acgaugaugguccucuguggaCAUCUUACUAGACAGUGCUGGAUugugugcucugauucUAACACUGUCUGGUAACGAUGUUcaaagggugag
..........((((((.(((((((((((((((((((((.((((..............)))).))))))))))))).)))))))).)))).)).

Structure

acgaugaugg  -    g        -             C    Uugugu 
          uc cucu uggaCAUC UUACUAGACAGUG UGGA      g
          || |||| |||||||| ||||||||||||| ||||       
          ag ggga acUUGUAG AAUGGUCUGUCAC AUcu      c
---------g  u    a        C             A    uagucu 

Annotation confidence High

Genome context

GL343647.1: 276643-276735 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from aca-mir-200a

Mature aca-miR-200a-5p

• Accession: MIMAT0021844
• Description: Anolis carolinensis aca-miR-200a-5p mature miRNA
• Sequence: 22 - CAUCUUACUAGACAGUGCUGGAU - 44
• Evidence: experimental ; Illumina [1]

Mature aca-miR-200a-3p

• Accession: MIMAT0021845
• Description: Anolis carolinensis aca-miR-200a-3p mature miRNA
• Sequence: 60 - UAACACUGUCUGGUAACGAUGUU - 82
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21775315
   MicroRNAs support a turtle + lizard clade
   "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
   "Biol Lett (2012) 8:104-107