Stem-loop ppy-mir-200a

Accession

MI0014861

Description

Pongo pygmaeus ppy-mir-200a precursor miRNA

Sequence

ccgggccccugugagcaucuuaccggacagugcuggauuucccagcuugacucUAACACUGUCUGGUAACGAUGUucaaaggugaccc
..((((.(((.(((((((((((((((((((((((((.....)))))...........)))))))))))).)))))))).))).).)))

Structure

cc   - c   g        -            -----------     a 
  ggg c ccu ugagcauc uuaccggacagu           gcugg u
  ||| | ||| |||||||| ||||||||||||           ||||| u
  ccc g gga acuUGUAG AAUGGUCUGUCA           cgacc u
--   a u   a        C            CAAUcucaguu     c 

Annotation confidence Not enough data

Genome context

chr1: 229422413-229422500 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ppy-mir-200a

Mature ppy-miR-200a

• Accession: MIMAT0015796
• Description: Pongo pygmaeus ppy-miR-200a mature miRNA
• Sequence: 54 - UAACACUGUCUGGUAACGAUGU - 75
• Evidence: not_experimental

References

1. PubMed ID: 20214803
   Genome-wide comparative analysis of microRNAs in three non-human primates
   Brameier M
   BMC Res Notes (2010) 3:64