Stem-loop oan-mir-200b

Accession

MI0006745

Description

Ornithorhynchus anatinus oan-mir-200b precursor miRNA

Literature search

1 open access papers mention oan-mir-200b
(1 sentences)

Sequence

28553 reads, 611.0 reads per million, 5 experiments

ucuggauucagggccgccacuacCAUCUUACUGGGCAGCAUUGGAUgaguucuguguuucUAAUACUGCCUGGUAAUGAUGAUggccgcggcccauacgcaacaacaga
..........(((((((..(((.(((((((((((((((.((((((.............)))))).))))))))))).)))).)))..)))))))...............

Structure

-----ucuggauuca       ca   c    -           C      Ugagu 
               gggccgc  cua CAUC UUACUGGGCAG AUUGGA     u
               |||||||  ||| |||| ||||||||||| ||||||     c
               cccggcg  ggU GUAG AAUGGUCCGUC UAAUcu     u
agacaacaacgcaua       cc   A    U           A      uugug 

Annotation confidence High

Genome context

5: 56175553-56175661 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from oan-mir-200b

Mature oan-miR-200b-5p

• Accession: MIMAT0006937
• Description: Ornithorhynchus anatinus oan-miR-200b-5p mature miRNA
• Sequence: 24 - CAUCUUACUGGGCAGCAUUGGAU - 46
• Evidence: experimental ; Illumina [1]

Mature oan-miR-200b-3p

• Accession: MIMAT0006938
• Description: Ornithorhynchus anatinus oan-miR-200b-3p mature miRNA
• Sequence: 61 - UAAUACUGCCUGGUAAUGAUGAU - 83
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004