miRBase entry: ggo-mir-200c

Stem-loop ggo-mir-200c

Accession

MI0002486

Description

Gorilla gorilla ggo-mir-200c precursor miRNA

Gene family

MIPF0000019; mir-8

Sequence

ccucgucuuacccagcaguguuugggugcgguugggagucucuAAUACUGCCGGGUAAUGAUGGAgg
(((((((((((((.((((((((.(((.((........))))).)))))))).)))))).))).))))

Structure

    -   -      a        u   u  ggu 
ccuc guc uuaccc gcaguguu ggg gc   u
|||| ||| |||||| |||||||| ||| ||    
ggAG UAG AAUGGG CGUCAUAA cuc ug   g
    G   U      C        u   -  agg

Annotation confidence Not enough data

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Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr12: 7040141-7040207 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ggo-mir-200c

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ggo-miR-200c

Accession	MIMAT0002197
Description	Gorilla gorilla ggo-miR-200c mature miRNA
Sequence	44 - AAUACUGCCGGGUAAUGAUGGA - 65
Evidence	not_experimental

References

PubMed ID: 15652478
Phylogenetic shadowing and computational identification of human microRNA genes
"Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
"Cell (2005) 120:21-24