Stem-loop eca-mir-200a

Accession

MI0012665

Description

Equus caballus eca-mir-200a precursor miRNA

Literature search

21 open access papers mention eca-mir-200a
(43 sentences)

Sequence

1682784 reads, 3478.0 reads per million, 221 experiments

cugggccccugugggCAUCUUACCGGACAGUGCUGGAUuucucggcucgacucUAACACUGUCUGGUAACGAUGUucaaaggugacccac
.(((((.(((.(((((((((((((((((((((.((((....(((...))).)))).))))))))))))).)))))))).))).).)))).

Structure

c    - c   g        -             C    Uuuc   g 
 uggg c ccu ugggCAUC UUACCGGACAGUG UGGA    ucg  
 |||| | ||| |||||||| ||||||||||||| ||||    ||| c
 accc g gga acuUGUAG AAUGGUCUGUCAC AUcu    agc  
c    a u   a        C             A    ---c   u 

Annotation confidence High

Genome context

2: 48713802-48713891 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from eca-mir-200a

Mature eca-miR-200a-5p

• Accession: MIMAT0051321
• Description: Equus caballus eca-miR-200a-5p mature miRNA
• Sequence: 16 - CAUCUUACCGGACAGUGCUGGAU - 38
• Evidence: not_experimental

Mature eca-miR-200a-3p

• Accession: MIMAT0012909
• Description: Equus caballus eca-miR-200a-3p mature miRNA
• Sequence: 54 - UAACACUGUCUGGUAACGAUGU - 75
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131