Stem-loop pma-mir-429-1

Accession

MI0017129

Description

Petromyzon marinus pma-mir-429-1 precursor miRNA

Sequence

gcuugcugccggcGAUCCUUACCAGGCAAGCUUAGAuuccucugcugauccuaucUAAUACUGUCUGGUUAUGUCGCcggcggugugc
((..((((((((((((....((((((((...((((((...((....))....))))))...))))))))...))))))))))))..))

Structure

  uu            CCUU        AGC      -ucc  u 
gc  gcugccggcGAU    ACCAGGCA   UUAGAu    uc g
||  ||||||||||||    ||||||||   ||||||    ||  
cg  uggcggcCGCUG    UGGUCUGU   AAUcua    ag c
  ug            -UAU        CAU      uccu  u 

Annotation confidence Not enough data

Genome context

ref|NC_046107.1|: 8664744-8664831 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from pma-mir-429-1

Mature pma-miR-429-1-5p

• Accession: MIMAT0019546
• Description: Petromyzon marinus pma-miR-429-1-5p mature miRNA
• Sequence: 14 - GAUCCUUACCAGGCAAGCUUAGA - 36
• Evidence: experimental ; 454 [1]

Mature pma-miR-429-1-3p

• Accession: MIMAT0019547
• Description: Petromyzon marinus pma-miR-429-1-3p mature miRNA
• Sequence: 56 - UAAUACUGUCUGGUUAUGUCGC - 77
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 20959416
   microRNAs reveal the interrelationships of hagfish, lampreys, and gnathostomes and the nature of the ancestral vertebrate
   "Heimberg AM, Cowper-Sal-lari R, Semon M, Donoghue PC, Peterson KJ"
   "Proc Natl Acad Sci U S A (2010) 107:19379-19383