Stem-loop mdo-mir-200c

Accession

MI0005339

Description

Monodelphis domestica mdo-mir-200c precursor miRNA

Sequence

20290 reads, 320 reads per million, 5 experiments

cccCAUCUUACCCAGCAGUGUUUGGgugccgcucgggagucucUAAUACUGCCGGGUAAUGAUGGagg
(((((((((((((.((((((((.((((.((.....)).).))).)))))))).)))))).))))).))

Structure

  -     -      A        U   - g  g 
cc cCAUC UUACCC GCAGUGUU GGg u cc c
|| ||||| |||||| |||||||| ||| | || u
gg GGUAG AAUGGG CGUCAUAA cuc g gg c
  a     U      C        U   u a  g 

Annotation confidence Medium

Genome context

chr8: 108475449-108475516 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mdo-mir-200c

Mature mdo-miR-200c-3p

• Accession: MIMAT0004150
• Description: Monodelphis domestica mdo-miR-200c-3p mature miRNA
• Sequence: 44 - UAAUACUGCCGGGUAAUGAUGG - 65
• Evidence: experimental ; Illumina [2]

Mature mdo-miR-200c-5p

• Accession: MIMAT0026694
• Description: Monodelphis domestica mdo-miR-200c-5p mature miRNA
• Sequence: 4 - CAUCUUACCCAGCAGUGUUUGG - 25
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17965199
   In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
   "Devor EJ, Samollow PB"
   "J Hered (2008) 99:66-72


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45