Stem-loop fru-mir-429

Accession

MI0003301

Description

Fugu rubripes fru-mir-429 precursor miRNA

Literature search

1 open access papers mention fru-mir-429
(1 sentences)

Sequence

60537 reads, 890.0 reads per million, 12 experiments

ccuguugauaggcgucuuaccagacaugguuagauguaauuauuguugucUAAUACUGUCUGGUAAUGCCGUccau
......(((.(((((..(((((((((..((((((((..........))))))))..)))))))))))))))))...

Structure

ccuguu   a     cu         ug        uaau 
      gau ggcgu  uaccagaca  guuagaug    u
      ||| |||||  |||||||||  ||||||||     
      cUG CCGUA  AUGGUCUGU  UAAUcugu    a
---uac   -     --         CA        uguu 

Annotation confidence Not enough data

Comments

This Fugu miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

ref|NC_042287.1|: 3943549-3943624 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from fru-mir-429

Mature fru-miR-429-3p

• Accession: MIMAT0002979
• Description: Fugu rubripes fru-miR-429-3p mature miRNA
• Sequence: 51 - UAAUACUGUCUGGUAAUGCCGU - 72
• Evidence: not_experimental

References