Stem-loop bta-mir-200b

Accession

MI0005055

Description

Bos taurus bta-mir-200b precursor miRNA mir-8

Gene
family

RF00241; mir-8

Literature search

176 open access papers mention bta-mir-200b
(792 sentences)

Sequence

7868637 reads, 3356.0 reads per million, 320 experiments

cCAUCUUACUGGGCAGCAUUGGAuggugucuggucucUAAUACUGCCUGGUAAUGAUGA
.(((((((((((((((.((((((.((.......)))))))).))))))))))).)))).

Structure

c    -           C      u  ug 
 CAUC UUACUGGGCAG AUUGGA gg  u
 |||| ||||||||||| |||||| ||  c
 GUAG AAUGGUCCGUC UAAUcu cu  u
A    U           A      -  gg 

Annotation confidence High

Genome context

16: 51323348-51323406 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from bta-mir-200b

Mature bta-miR-200b-5p

• Accession: MIMAT0060966
• Description: Bos taurus bta-miR-200b-5p mature miRNA
• Sequence: 2 - CAUCUUACUGGGCAGCAUUGGA - 23
• Evidence: experimental ; cloned [1], Illumina [2]

Mature bta-miR-200b-3p

• Accession: MIMAT0003842
• Description: Bos taurus bta-miR-200b-3p mature miRNA
• Sequence: 38 - UAAUACUGCCUGGUAAUGAUGA - 59
• Evidence: experimental ; cloned [1], Illumina [2]

References

1. PubMed ID: 17105755
   Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
   "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
   "Physiol Genomics (2007) 29:35-43


2. PubMed ID: 21912509
   Solexa sequencing of novel and differentially expressed microRNAs in testicular and ovarian tissues in Holstein cattle
   "Huang J, Ju Z, Li Q, Hou Q, Wang C, Li J, Li R, Wang L, Sun T, Hang S, Gao Y, Hou M, Zhong J"
   "Int J Biol Sci (2011) 7:1016-1026