Stem-loop ssa-mir-429

Accession

MI0026698

Description

Salmo salar ssa-mir-429 precursor miRNA

Literature search

2 open access papers mention ssa-mir-429
(2 sentences)

Sequence

192810 reads, 4645.0 reads per million, 85 experiments

GUCUUACCAGACAUGGUUAGAucuaauuaucccugucUAAUACUGUCUGGUAAUGCCG
((.((((((((((..(((((((............)))))))..)))))))))).))..

Structure

--  C          UG       cuaau 
  GU UUACCAGACA  GUUAGAu     u
  || ||||||||||  |||||||      
  CG AAUGGUCUGU  UAAUcug     a
GC  U          CA       ucccu 

Annotation confidence High

Genome context

Unknown

Mature ssa-miR-429-5p

• Accession: MIMAT0032629
• Description: Salmo salar ssa-miR-429-5p mature miRNA
• Sequence: 1 - GUCUUACCAGACAUGGUUAGA - 21
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-429-3p

• Accession: MIMAT0032630
• Description: Salmo salar ssa-miR-429-3p mature miRNA
• Sequence: 38 - UAAUACUGUCUGGUAAUGCCG - 58
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482