Stem-loop ssa-mir-200a-2

Accession

MI0026582

Description

Salmo salar ssa-mir-200a-2 precursor miRNA

Sequence

1093687 reads, 15186.0 reads per million, 87 experiments

CAUCUUACGAGGCAGCAUUGGAuauaaucacucucucUAAUACUGCCUGGUAAUGAUGAu
((((((((.((((((.((((((.............)))))).)))))).)))).))))..

Structure

--    -    G      C      uauaa 
  CAUC UUAC AGGCAG AUUGGA     u
  |||| |||| |||||| ||||||     c
  GUAG AAUG UCCGUC UAAUcu     a
uA    U    G      A      cucuc 

Annotation confidence High

Genome context

Unknown

Mature ssa-miR-200a-2-5p

• Accession: MIMAT0032477
• Description: Salmo salar ssa-miR-200a-2-5p mature miRNA
• Sequence: 1 - CAUCUUACGAGGCAGCAUUGGA - 22
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-200a-3p

• Accession: MIMAT0032476
• Description: Salmo salar ssa-miR-200a-3p mature miRNA
• Sequence: 38 - UAAUACUGCCUGGUAAUGAUGA - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482