Stem-loop mml-mir-200c

Accession

MI0002484

Description

Macaca mulatta mml-mir-200c precursor miRNA

Literature search

2 open access papers mention mml-mir-200c
(2 sentences)

Sequence

62214 reads, 458 reads per million, 9 experiments

cccuCGUCUUACCCAGCAGUGUUUGGgugcgguugggagucucuAAUACUGCCGGGUAAUGAUGGAgg
.(((((((((((((.((((((((.(((.((........))))).)))))))).)))))).))).))))

Structure

c    -   -      A        U   u  ggu 
 ccuC GUC UUACCC GCAGUGUU GGg gc   u
 |||| ||| |||||| |||||||| ||| ||    
 ggAG UAG AAUGGG CGUCAUAA cuc ug   g
-    G   U      C        u   -  agg 

Annotation confidence Not enough data

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr11: 7280477-7280544 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mml-mir-200c

Mature mml-miR-200c-3p

• Accession: MIMAT0002195
• Description: Macaca mulatta mml-miR-200c-3p mature miRNA
• Sequence: 45 - AAUACUGCCGGGUAAUGAUGGA - 66
• Evidence: experimental ; Illumina [2]

Mature mml-miR-200c-5p

• Accession: MIMAT0026560
• Description: Macaca mulatta mml-miR-200c-5p mature miRNA
• Sequence: 5 - CGUCUUACCCAGCAGUGUUUGG - 26
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45