Stem-loop eca-mir-200b

Accession

MI0012666

Description

Equus caballus eca-mir-200b precursor miRNA

Literature search

19 open access papers mention eca-mir-200b
(164 sentences)

Sequence

2874218 reads, 7349.0 reads per million, 227 experiments

gccgucgcCAUCUUACUGGGCAGCAUUGGAugugucuggucucUAAUACUGCCUGGUAAUGAUGACggc
(((((((.(((..((((((((((.((((((.(........))))))).))))))))))))).)))))))

Structure

       c   CU          C      u ugu 
gccgucg CAU  UACUGGGCAG AUUGGA g   c
||||||| |||  |||||||||| |||||| |    
cggCAGU GUA  AUGGUCCGUC UAAUcu c   u
       A   --          A      - ugg 

Annotation confidence High

Genome context

2: 48714468-48714536 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from eca-mir-200b

Mature eca-miR-200b-5p

• Accession: MIMAT0051322
• Description: Equus caballus eca-miR-200b-5p mature miRNA
• Sequence: 9 - CAUCUUACUGGGCAGCAUUGGA - 30
• Evidence: not_experimental

Mature eca-miR-200b-3p

• Accession: MIMAT0012910
• Description: Equus caballus eca-miR-200b-3p mature miRNA
• Sequence: 44 - UAAUACUGCCUGGUAAUGAUGAC - 66
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131