Stem-loop ppy-mir-200c

Accession

MI0002488

Description

Pongo pygmaeus ppy-mir-200c precursor miRNA

Sequence

cccucgucuuacccagcaguguuugggugcgguugggagucucuAAUACUGCCGGGUAAUGAUGGAgg
.(((((((((((((.((((((((.(((.((........))))).)))))))).)))))).))).))))

Structure

c    -   -      a        u   u  ggu 
 ccuc guc uuaccc gcaguguu ggg gc   u
 |||| ||| |||||| |||||||| ||| ||    
 ggAG UAG AAUGGG CGUCAUAA cuc ug   g
-    G   U      C        u   -  agg 

Annotation confidence Not enough data

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr12: 7199699-7199766 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ppy-mir-200c

Mature ppy-miR-200c

• Accession: MIMAT0002199
• Description: Pongo pygmaeus ppy-miR-200c mature miRNA
• Sequence: 45 - AAUACUGCCGGGUAAUGAUGGA - 66
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24