Stem-loop ola-mir-200b

Accession

MI0019449

Description

Oryzias latipes ola-mir-200b precursor miRNA

Literature search

3 open access papers mention ola-mir-200b
(4 sentences)

Sequence

260192 reads, 1456.0 reads per million, 49 experiments

gagcagcuuuaggcgacuaccucCAUCUUACGAGGCAGCAUUGGAuaucaucccuuucucUAAUACUGCCUGGUAAUGAUGAUggucgucaccugccc
.........((((.(((.(((..((((((((.((((((.((((((.............)))))).)))))).)))).))))..))).))).))))...

Structure

gagcagcuu    c   u   uc    -    G      C      uauca 
         uagg gac acc  CAUC UUAC AGGCAG AUUGGA     u
         |||| ||| |||  |||| |||| |||||| ||||||     c
         gucc cug ugg  GUAG AAUG UCCGUC UAAUcu     c
------ccc    a   c   UA    U    G      A      cuuuc 

Annotation confidence High

Genome context

7: 217985-218082 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ola-mir-200b

Mature ola-miR-200b-5p

• Accession: MIMAT0057098
• Description: Oryzias latipes ola-miR-200b-5p mature miRNA
• Sequence: 24 - CAUCUUACGAGGCAGCAUUGGA - 45
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-200b-3p

• Accession: MIMAT0022572
• Description: Oryzias latipes ola-miR-200b-3p mature miRNA
• Sequence: 61 - UAAUACUGCCUGGUAAUGAUGAU - 83
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8