Stem-loop ola-mir-200a

Accession

MI0019448

Description

Oryzias latipes ola-mir-200a precursor miRNA

Literature search

3 open access papers mention ola-mir-200a
(4 sentences)

Sequence

1841343 reads, 7617.0 reads per million, 49 experiments

uagaaaugucuucuaggaucCAUCUUACCUGACAGUGAUGGAcuguacagcuguugcucUAACACUGUCUGGUAACGAUGUUuccuggggggcucug
((((...(((((((((((..(((((((((.(((((((.((((.......((....)))))).))))))).))))).))))..)))))))))))))))

Structure

    aau           uc    -     U       A    cuguaca  u 
uaga   gucuucuagga  CAUC UUACC GACAGUG UGGA       gc g
||||   |||||||||||  |||| ||||| ||||||| ||||       ||  
gucu   cgggggguccu  GUAG AAUGG CUGUCAC AUcu       cg u
    ---           UU    C     U       A    -------  u 

Annotation confidence High

Genome context

7: 217696-217792 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ola-mir-200a

Mature ola-miR-200a-5p

• Accession: MIMAT0057097
• Description: Oryzias latipes ola-miR-200a-5p mature miRNA
• Sequence: 21 - CAUCUUACCUGACAGUGAUGGA - 42
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-200a-3p

• Accession: MIMAT0022571
• Description: Oryzias latipes ola-miR-200a-3p mature miRNA
• Sequence: 60 - UAACACUGUCUGGUAACGAUGUU - 82
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8