Stem-loop xtr-mir-200b

Accession

MI0004946

Description

Xenopus tropicalis xtr-mir-200b precursor miRNA

Literature search

2 open access papers mention xtr-mir-200b
(6 sentences)

Sequence

1949 reads, 186.0 reads per million, 4 experiments

cuguggcgcuauugcCAUCUUACUGGGCAGCAUUGGauuuugucuauguuucUAAUACUGCCUGGUAAUGAUGAUuauggcgccccaca
.((.((((((((...(((((((((((((((.((((((.............)))))).))))))))))).))))...)))))))).))..

Structure

-c  u        ugc    -           C      uuuug 
  ug ggcgcuau   CAUC UUACUGGGCAG AUUGGa     u
  || ||||||||   |||| ||||||||||| ||||||     c
  ac ccgcggua   GUAG AAUGGUCCGUC UAAUcu     u
ac  c        uUA    U           A      uugua 

Annotation confidence High

Genome context

7: 87891785-87891873 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from xtr-mir-200b

Mature xtr-miR-200b-5p

• Accession: MIMAT0052170
• Description: Xenopus tropicalis xtr-miR-200b-5p mature miRNA
• Sequence: 16 - CAUCUUACUGGGCAGCAUUGG - 36
• Evidence: not_experimental

Mature xtr-miR-200b-3p

• Accession: MIMAT0003694
• Description: Xenopus tropicalis xtr-miR-200b-3p mature miRNA
• Sequence: 53 - UAAUACUGCCUGGUAAUGAUGAU - 75
• Evidence: not_experimental

References