Stem-loop ssa-mir-200a-1

Accession

MI0026581

Description

Salmo salar ssa-mir-200a-1 precursor miRNA

Sequence

1092663 reads, 15163.0 reads per million, 87 experiments

CAUCUUACAAGGCAGUUUUGGAugucauaacucucucUAAUACUGCCUGGUAAUGAUGAu
((((((((.(((((((.(((((.(........)..))))).))))))).)))).))))..

Structure

--    -    A       U     -u uca 
  CAUC UUAC AGGCAGU UUGGA  g   u
  |||| |||| ||||||| |||||  |    
  GUAG AAUG UCCGUCA AAUcu  c   a
uA    U    G       U     cu uca 

Annotation confidence High

Genome context

Unknown

Mature ssa-miR-200a-1-5p

• Accession: MIMAT0032475
• Description: Salmo salar ssa-miR-200a-1-5p mature miRNA
• Sequence: 1 - CAUCUUACAAGGCAGUUUUGGA - 22
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-200a-3p

• Accession: MIMAT0032476
• Description: Salmo salar ssa-miR-200a-3p mature miRNA
• Sequence: 38 - UAAUACUGCCUGGUAAUGAUGA - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482