miRBase entry: mmu-mir-202

Stem-loop mmu-mir-202


Accession
MI0000245
Symbol
MGI: Mir202
Description
Mus musculus mmu-mir-202 precursor miRNA
Gene family
MIPF0000121; mir-202

Literature search
19 open access papers mention mmu-mir-202
(76 sentences)

Sequence

175693 reads, 1967 reads per million, 48 experiments
guuccuuuUUCCUAUGCAUAUACUUCUUUguggaucuggucuaaAGAGGUAUAGCGCAUGGGAAGAuggagc
(((((.(((((((((((.((((((((((..(((((...)))))))))))))))..))))))))))).)))))

Structure
     u           -A          Ug     c 
guucc uuUUCCUAUGC  UAUACUUCUU  uggau  
||||| |||||||||||  ||||||||||  ||||| u
cgagg AGAAGGGUACG  AUAUGGAGAa  aucug  
     u           CG          --     g 


Annotation confidence High
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Genome context
chr7: 139957689-139957760 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from mmu-mir-202
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mmu-miR-202-5p

Accession MIMAT0004546
Description Mus musculus mmu-miR-202-5p mature miRNA
Sequence 9 - UUCCUAUGCAUAUACUUCUUU - 29
Evidence experimental
cloned [3], Illumina [4-5]
Database links
Predicted targets

Mature mmu-miR-202-3p

Accession MIMAT0000235
Description Mus musculus mmu-miR-202-3p mature miRNA
Sequence 45 - AGAGGUAUAGCGCAUGGGAAGA - 66
Evidence experimental
cloned [1-3], Illumina [4-5]
Database links
Predicted targets

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 12554859
    New microRNAs from mouse and human
    "Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T"
    "RNA (2003) 9:175-179

  3. PubMed ID: 16766679
    Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes
    "Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H"
    "Genes Dev (2006) 20:1732-1743

  4. PubMed ID: 20215419
    MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
    "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
    "Mol Hum Reprod (2010) 16:463-471

  5. PubMed ID: 20413612
    Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
    "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
    "Genes Dev (2010) 24:992-1009