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miRBase |
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Stem-loop sequence cel-mir-250 |
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Accession | MI0000326 (change log) | |||||
Description | Caenorhabditis elegans miR-250 stem-loop | |||||
Gene family | MIPF0000283; mir-250 | |||||
Literature search |
1 open access papers mention cel-mir-250 | |||||
Stem-loop |
----a cuuc g c uu c c c - aaca 5' gggu g acca gcc caguug cu gugau cg cca c |||| | |||| ||| |||||| || ||||| || ||| a 3' ccca c uggu cgg gucaac ga cacua gc ggu a uuuua ugcu g a uu u - a a aaau |
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Deep sequencing |
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Confidence |
Annotation confidence: high
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Comments |
The extents of the dominant mature miRNA species are adjusted here in accordance with a large scale cloning and sequencing study [2]. |
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Genome context |
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Clustered miRNAs |
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Database links |
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Mature sequence cel-miR-250-5p |
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Accession | MIMAT0020339 |
Previous IDs | cel-miR-250* |
Sequence |
18 - ccuucaguugccucgugauccg - 39 |
Deep sequencing | 1610 reads, 16 experiments |
Evidence | experimental; Illumina [5] |
Database links |
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Mature sequence cel-miR-250-3p |
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Accession | MIMAT0000306 |
Previous IDs | cel-miR-250 |
Sequence |
60 - aaucacagucaacuguuggc - 79 |
Deep sequencing | 496648 reads, 17 experiments |
Evidence | experimental; Northern [1-2], PCR [1], Illumina [3,5], CLIPseq [4] |
Database links |
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Predicted targets |
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References |
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1 |
PMID:12672692
"The microRNAs of Caenorhabditis elegans"
Genes Dev. 17:991-1008(2003).
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2 |
PMID:17174894
"Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans"
Cell. 127:1193-1207(2006).
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4 |
PMID:20062054
"Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans"
Nat Struct Mol Biol. 17:173-179(2010).
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5 |