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miRBase |
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Stem-loop sequence cel-mir-259 |
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Accession | MI0000336 (change log) | ||||
Description | Caenorhabditis elegans miR-259 stem-loop | ||||
Gene family | MIPF0000299; mir-259 | ||||
Literature search |
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2 open access papers mention cel-mir-259 | ||||
Stem-loop |
---uc --a a - u u a ucuuu 5' agucauug aacgagu aaucucau cc aauc ggu gca c |||||||| ||||||| |||||||| || |||| ||| ||| 3' ucagugau uuguuca uuagggua gg uuag cca cgu g uuuuu aaa g c u - c uccaa |
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Deep sequencing |
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Confidence |
Annotation confidence: high
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Comments |
miR-259 was predicted by computational analysis and conservation in C. elegans and C. briggsae, and the microRNA confirmed by PCR amplification, cloning and sequencing [1]. |
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Genome context |
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Database links |
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Mature sequence cel-miR-259-5p |
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Accession | MIMAT0000314 |
Previous IDs | cel-miR-259 |
Sequence |
19 - aaaucucauccuaaucugguagca - 42 |
Deep sequencing | 2101 reads, 16 experiments |
Evidence | experimental; cloned [1-3], Illumina [4,6], CLIPseq [5] |
Database links |
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Predicted targets |
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Mature sequence cel-miR-259-3p |
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Accession | MIMAT0020342 |
Previous IDs | cel-miR-259* |
Sequence |
57 - ccaccgauuuggcaugggauugac - 80 |
Deep sequencing | 654 reads, 13 experiments |
Evidence | experimental; Illumina [6] |
Database links |
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References |
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1 |
PMID:12747828
"MicroRNAs and other tiny endogenous RNAs in C. elegans"
Curr Biol. 13:807-818(2003).
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2 |
PMID:15317971
"Patterns of flanking sequence conservation and a characteristic upstream motif for microRNA gene identification"
RNA. 10:1309-1322(2004).
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3 |
PMID:17174894
"Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans"
Cell. 127:1193-1207(2006).
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4 | |
5 |
PMID:20062054
"Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans"
Nat Struct Mol Biol. 17:173-179(2010).
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6 |