miRBase entry: dme-mir-263a

Stem-loop dme-mir-263a


Accession
MI0000343
Description
Drosophila melanogaster dme-mir-263a precursor miRNA
Gene family
MIPF0000122; mir-263

Literature search
10 open access papers mention dme-mir-263a
(175 sentences)

Sequence

559531 reads, 4635 reads per million, 49 experiments
uagaucucggcacaguuAAUGGCACUGGAAGAAUUCACGGGguaauuuuuauacaaccCGUGAUCUCUUAGUGGCAUCUAuggugcgagaauaa
....(((((.(((.((..(((.((((((.(((..(((((((...............)))))))))).)))))).)))..)).))))))))....

Structure
uaga     g   a  uA   G      A   AU       guaauu 
    ucucg cac gu  AUG CACUGG AGA  UCACGGG      u
    ||||| ||| ||  ||| |||||| |||  |||||||      u
    agagc gug uA  UAC GUGAUU UCU  AGUGCcc      u
aaua     -   g  UC   G      C   --       aacaua 


Annotation confidence Not enough data
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Genome context
chr2L: 11953410-11953503 [-]

Database links

Mature dme-miR-263a-5p

Accession MIMAT0000319
Description Drosophila melanogaster dme-miR-263a-5p mature miRNA
Sequence 18 - AAUGGCACUGGAAGAAUUCACGGG - 41
Evidence experimental
Northern [1], 454 [3-4], Illumina [4]
Database links
Predicted targets

Mature dme-miR-263a-3p

Accession MIMAT0020799
Description Drosophila melanogaster dme-miR-263a-3p mature miRNA
Sequence 59 - CGUGAUCUCUUAGUGGCAUCUA - 80
Evidence not_experimental
Database links

References

  1. PubMed ID: 12769849
    Computational and experimental identification of C. elegans microRNAs
    "Grad Y, Aach J, Hayes GD, Reinhart BJ, Church GM, Ruvkun G, Kim J"
    "Mol Cell (2003) 11:1253-1263

  2. PubMed ID: 17989254
    Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs
    "Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC"
    "Genome Res (2007) 17:1850-1864

  3. PubMed ID: 17989255
    Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes
    "Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis M"
    "Genome Res (2007) 17:1865-1879

  4. PubMed ID: 12844358
    Computational identification of Drosophila microRNA genes
    "Lai EC, Tomancak P, Williams RW, Rubin GM"
    "Genome Biol (2003) 4:R42