Accession
MI0000380
Description
Drosophila melanogaster
dme-mir-286 precursor miRNA
Gene family
MIPF0000225;
mir-286
Literature search
8 open access papers mention dme-mir-286
(27 sentences)
(27 sentences)
Sequence
119660
reads,
5368
reads per million, 49 experiments
uuaaaauugaauGGCGAAUGUCGGUAUGGUCUCUuuuucaaagaaagguuucgauuaagcgaagUGACUAGACCGAACACUCGUGCUauaauuuuaaaau
(((((((((....((((.(((((((.(((((.((((......(((....)))........)))).))))).)))).))).))))....)))))))))...
(((((((((....((((.(((((((.(((((.((((......(((....)))........)))).))))).)))).))).))))....)))))))))...
Structure
--- aauG A - A U --uucaaa a uuaaaauug GCGA UGU CGGU UGGUC CUuu gaa g ||||||||| |||| ||| |||| ||||| |||| ||| aauuuuaau UGCU ACA GCCA AUCAG gaag cuu g uaa aUCG C A G U cgaauuag u
Annotation confidence
High
Do you think this miRNA is real?
Comments
miR-286 was reported independently in references [1] and [2]. Computational prediction followed by northern blotting confirmed that the strand containing the predicted miR is predominantly expressed [1]. Reference [2] confirmed the 5' end of the excised miRNA by cloning and reported a length distribution of 22-24 nt with 23 nt the most commonly expressed.
Genome context
chr2R: 19661422-19661521 [-]
Clustered miRNAs
7 other miRNAs are < 10 kb from dme-mir-286
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature dme-miR-286-3p
| Accession | MIMAT0000359 |
| Description | Drosophila melanogaster dme-miR-286-3p mature miRNA |
| Sequence | 65 - UGACUAGACCGAACACUCGUGCU - 87 |
| Evidence |
experimental
Northern [1], cloned [2], 454 [3-4], Illumina [4] |
| Database links |
|
| Predicted targets |
|
Mature dme-miR-286-5p
| Accession | MIMAT0020820 |
| Description | Drosophila melanogaster dme-miR-286-5p mature miRNA |
| Sequence | 13 - GGCGAAUGUCGGUAUGGUCUCU - 34 |
| Evidence | not_experimental |
| Database links |
|
References
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