miRBase entry: dme-mir-303

Stem-loop dme-mir-303


Accession
MI0000409
Description
Drosophila melanogaster dme-mir-303 precursor miRNA
Gene family
MIPF0001013; mir-303

Literature search
2 open access papers mention dme-mir-303
(9 sentences)

Sequence

992 reads, 390 reads per million, 31 experiments
ucuuggUUUAGGUUUCACAGGAAACUGGUuuaauaacgaaaaCUAGUUUCCUCUAAAAUCCUAAucaaga
((((((((..(((((...(((((((((((((........)))))))))))))...)))))..))))))))

Structure
        UA     CAC             aau 
ucuuggUU  GGUUU   AGGAAACUGGUuu   a
||||||||  |||||   |||||||||||||    
agaacuAA  CUAAA   UCCUUUGAUCaaa   a
        UC     AUC             agc 


Annotation confidence High
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Genome context
chrX: 4366179-4366248 [-]
Clustered miRNAs
4 other miRNAs are < 10 kb from dme-mir-303
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dme-miR-303-5p

Accession MIMAT0000388
Description Drosophila melanogaster dme-miR-303-5p mature miRNA
Sequence 7 - UUUAGGUUUCACAGGAAACUGGU - 29
Evidence experimental
cloned [1], 454 [2-3], Illumina [3]
Database links
Predicted targets

Mature dme-miR-303-3p

Accession MIMAT0020824
Description Drosophila melanogaster dme-miR-303-3p mature miRNA
Sequence 43 - CUAGUUUCCUCUAAAAUCCUAA - 64
Evidence not_experimental
Database links

References

  1. PubMed ID: 12919683
    The small RNA profile during Drosophila melanogaster development
    "Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B, Gaasterland T, Meyer J, Tuschl T"
    "Dev Cell (2003) 5:337-350

  2. PubMed ID: 17989254
    Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs
    "Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC"
    "Genome Res (2007) 17:1850-1864

  3. PubMed ID: 17989255
    Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes
    "Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis M"
    "Genome Res (2007) 17:1865-1879