miRBase entry: dme-mir-312

Stem-loop dme-mir-312


Accession
MI0000424
Description
Drosophila melanogaster dme-mir-312 precursor miRNA
Gene family
MIPF0000573; mir-312

Literature search
10 open access papers mention dme-mir-312
(59 sentences)

Sequence

418810 reads, 3486 reads per million, 49 experiments
gauuUGGUUCGUCACAAGGGCAAUUCUgcauuuuuuaacuagUAUUGCACUUGAGACGGCCUGAuu
((((.(((.((((.((((.(((((.(((...........))).))))).)))).))))))).))))

Structure
    U   U    A    G     U   cauu 
gauu GGU CGUC CAAG GCAAU CUg    u
|||| ||| |||| |||| ||||| |||    u
uuAG CCG GCAG GUUC CGUUA gau    u
    U   -    A    A     U   caau 


Annotation confidence High
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Genome context
chr2R: 20584056-20584121 [-]
Clustered miRNAs
6 other miRNAs are < 10 kb from dme-mir-312
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dme-miR-312-3p

Accession MIMAT0000404
Description Drosophila melanogaster dme-miR-312-3p mature miRNA
Sequence 43 - UAUUGCACUUGAGACGGCCUGA - 64
Evidence experimental
cloned [1], Northern [1], 454 [2-3], Illumina [3]
Database links
Predicted targets

Mature dme-miR-312-5p

Accession MIMAT0020838
Description Drosophila melanogaster dme-miR-312-5p mature miRNA
Sequence 5 - UGGUUCGUCACAAGGGCAAUUCU - 27
Evidence not_experimental
Database links

References

  1. PubMed ID: 12919683
    The small RNA profile during Drosophila melanogaster development
    "Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B, Gaasterland T, Meyer J, Tuschl T"
    "Dev Cell (2003) 5:337-350

  2. PubMed ID: 17989254
    Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs
    "Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC"
    "Genome Res (2007) 17:1850-1864

  3. PubMed ID: 17989255
    Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes
    "Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis M"
    "Genome Res (2007) 17:1865-1879