miRBase entry: mmu-mir-208a

Stem-loop mmu-mir-208a


Accession
MI0000555
Symbol
MGI: Mir208a
Description
Mus musculus mmu-mir-208a precursor miRNA
Gene family
MIPF0000178; mir-208

Literature search
81 open access papers mention mmu-mir-208a
(361 sentences)

Sequence

1015 reads, 53 reads per million, 31 experiments
uuccuuugacggguGAGCUUUUGGCCCGGGUUAUACcugacacucacguAUAAGACGAGCAAAAAGCUUGUuggucagaggag
.(((((((((.(((((((((((.((.((..((((((.(((...))).))))))..)).)).))))))))))).))))))))).

Structure
u         g           G  C  GG      c   c 
 uccuuugac gguGAGCUUUU GC CG  UUAUAC uga  
 ||||||||| ||||||||||| || ||  |||||| ||| a
 aggagacug uUGUUCGAAAA CG GC  AAUAug acu  
g         g           A  A  AG      c   c 


Annotation confidence High
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Genome context
chr14: 54949060-54949142 [-]

Database links

Mature mmu-miR-208a-5p

Accession MIMAT0017014
Description Mus musculus mmu-miR-208a-5p mature miRNA
Sequence 15 - GAGCUUUUGGCCCGGGUUAUAC - 36
Evidence experimental
Illumina [3]
Database links
Predicted targets

Mature mmu-miR-208a-3p

Accession MIMAT0000520
Description Mus musculus mmu-miR-208a-3p mature miRNA
Sequence 50 - AUAAGACGAGCAAAAAGCUUGU - 71
Evidence experimental
cloned [1-2], Illumina [3]
Database links
Predicted targets

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 12554859
    New microRNAs from mouse and human
    "Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T"
    "RNA (2003) 9:175-179

  3. PubMed ID: 20413612
    Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
    "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
    "Genes Dev (2010) 24:992-1009