miRBase entry: mmu-mir-98

Stem-loop mmu-mir-98


Accession
MI0000586
Symbol
MGI: Mir98
Description
Mus musculus mmu-mir-98 precursor miRNA
Gene family
MIPF0000002; let-7

Literature search
61 open access papers mention mmu-mir-98
(616 sentences)

Sequence

168694 reads, 767 reads per million, 106 experiments
cugcacaugcuggggUGAGGUAGUAAGUUGUAUUGUUgugggguagggauuuuaggccccaguaagaagauaaCUAUACAACUUACUACUUUCCUugguguguggcau
.((((((((((((((.(((((((((((((((((.((((((((((...........)))))).........)))).)))))))))))))))))))))))))))).))).

Structure
c   -           U                 U    ---------      aggg 
 ugc acaugcugggg GAGGUAGUAAGUUGUAU GUUg         uggggu    a
 ||| ||||||||||| ||||||||||||||||| ||||         ||||||    u
 acg ugugugguUCC UUUCAUCAUUCAACAUA Caau         accccg    u
u   g           -                 U    agaagaaug      gauu 


Annotation confidence High
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Genome context
chrX: 151913214-151913321 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from mmu-mir-98
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mmu-miR-98-5p

Accession MIMAT0000545
Description Mus musculus mmu-miR-98-5p mature miRNA
Sequence 16 - UGAGGUAGUAAGUUGUAUUGUU - 37
Evidence experimental
cloned [1], Illumina [2,4]
Database links
Predicted targets

Mature mmu-miR-98-3p

Accession MIMAT0017023
Description Mus musculus mmu-miR-98-3p mature miRNA
Sequence 74 - CUAUACAACUUACUACUUUCCU - 95
Evidence experimental
454 [3], Illumina [4]
Database links
Predicted targets

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 20215419
    MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
    "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
    "Mol Hum Reprod (2010) 16:463-471

  3. PubMed ID: 20413612
    Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
    "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
    "Genes Dev (2010) 24:992-1009

  4. PubMed ID: 20668074
    Identification and analysis of expression of novel microRNAs of murine gammaherpesvirus 68
    "Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H"
    "J Virol (2010) 84:10266-10275