miRBase entry: mmu-mir-340

Stem-loop mmu-mir-340


Accession
MI0000623
Symbol
MGI: Mir340
Description
Mus musculus mmu-mir-340 precursor miRNA
Gene family
MIPF0000191; mir-340

Literature search
38 open access papers mention mmu-mir-340
(352 sentences)

Sequence

375083 reads, 1662 reads per million, 107 experiments
caauuguacuuggugugaUUAUAAAGCAAUGAGACUGAUUgucauaugucguuugugggaUCCGUCUCAGUUACUUUAUAGCcauaccugguaucuua
.....(((((.((((((.((((((((...((((((.((((.(((((.......))))))))).))))))....)))))))).)))))).)))))....

Structure
caauu     u      a        -CAA      U    g     ug 
     guacu ggugug UUAUAAAG    UGAGAC GAUU ucaua  u
     ||||| |||||| ||||||||    |||||| |||| |||||  c
     uaugg ccauac GAUAUUUC    ACUCUG CUag ggugu  g
-auuc     u      C        AUUG      C    -     uu 


Annotation confidence High
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Genome context
chr11: 50069702-50069799 [+]

Database links

Mature mmu-miR-340-5p

Accession MIMAT0004651
Description Mus musculus mmu-miR-340-5p mature miRNA
Sequence 19 - UUAUAAAGCAAUGAGACUGAUU - 40
Evidence experimental
cloned [1], Illumina [2-3]
Database links
Predicted targets

Mature mmu-miR-340-3p

Accession MIMAT0000586
Description Mus musculus mmu-miR-340-3p mature miRNA
Sequence 61 - UCCGUCUCAGUUACUUUAUAGC - 82
Evidence experimental
cloned [1], Illumina [2-3]
Database links
Predicted targets

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 20215419
    MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
    "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
    "Mol Hum Reprod (2010) 16:463-471

  3. PubMed ID: 20413612
    Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
    "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
    "Genes Dev (2010) 24:992-1009