Stem-loop mmu-mir-10a

Accession

MI0000685

Symbol

MGI: Mir10a

Description

Mus musculus mmu-mir-10a precursor miRNA

Literature search

117 open access papers mention mmu-mir-10a
(937 sentences)

Sequence

2950589 reads, 2627 reads per million, 106 experiments

gaccugucugucuucuguauaUACCCUGUAGAUCCGAAUUUGUGuaaggaauuuuguggucaCAAAUUCGUAUCUAGGGGAAUAuguaguugacauaaacacuccgcuca
....(((.((((..((((((((.((((.(((((.((((((((((................)))))))))).))))))))).))))))))..))))...))).........

Structure

-----gacc   --c    uu        A    G     C          uaaggaa 
         ugu   uguc  cuguauaU CCCU UAGAU CGAAUUUGUG       u
         |||   ||||  |||||||| |||| ||||| ||||||||||        
         aca   acag  gauguAUA GGGG AUCUA GCUUAAACac       u
acucgccuc   aau    uu        A    -     U          ugguguu 

Annotation confidence Medium

Genome context

chr11: 96317165-96317274 [+]

Mature mmu-miR-10a-5p

• Accession: MIMAT0000648
• Description: Mus musculus mmu-miR-10a-5p mature miRNA
• Sequence: 22 - UACCCUGUAGAUCCGAAUUUGUG - 44
• Evidence: experimental ; cloned [2], Illumina [3-4]

Mature mmu-miR-10a-3p

• Accession: MIMAT0004659
• Description: Mus musculus mmu-miR-10a-3p mature miRNA
• Sequence: 63 - CAAAUUCGUAUCUAGGGGAAUA - 84
• Evidence: experimental ; cloned [2], Illumina [3-4]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 12624257
   Vertebrate microRNA genes
   "Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP"
   "Science (2003) 299:1540


3. PubMed ID: 20215419
   MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
   "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
   "Mol Hum Reprod (2010) 16:463-471


4. PubMed ID: 20413612
   Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
   "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
   "Genes Dev (2010) 24:992-1009