miRBase entry: mmu-mir-19a

Stem-loop mmu-mir-19a


Accession
MI0000688
Symbol
MGI: Mir19a
Description
Mus musculus mmu-mir-19a precursor miRNA
Gene family
MIPF0000011; mir-19

Literature search
140 open access papers mention mmu-mir-19a
(782 sentences)

Sequence

51606 reads, 839 reads per million, 100 experiments
gcagcccucuguUAGUUUUGCAUAGUUGCACUACaagaagaauguaguUGUGCAAAUCUAUGCAAAACUGAugguggccugc
((((.((.(((((((((((((((((((((((((((.......))))...))))))..))))))))))))))))).)).))))

Structure
    c  u                 --      ---    ag 
gcag cc cuguUAGUUUUGCAUAG  UUGCAC   UACa  a
|||| || |||||||||||||||||  ||||||   ||||  a
cguc gg gguAGUCAAAACGUAUC  AACGUG   augu  g
    c  u                 UA      Uug    aa 


Annotation confidence High
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Genome context
chr14: 115044000-115044081 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from mmu-mir-19a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mmu-miR-19a-5p

Accession MIMAT0004660
Description Mus musculus mmu-miR-19a-5p mature miRNA
Sequence 13 - UAGUUUUGCAUAGUUGCACUAC - 34
Evidence experimental
cloned [2], Illumina [3-4]
Database links
Predicted targets

Mature mmu-miR-19a-3p

Accession MIMAT0000651
Description Mus musculus mmu-miR-19a-3p mature miRNA
Sequence 49 - UGUGCAAAUCUAUGCAAAACUGA - 71
Evidence experimental
cloned [1-2], Illumina [3-4]
Database links
Predicted targets

References

  1. PubMed ID: 12554860
    Numerous microRNPs in neuronal cells containing novel microRNAs
    "Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G"
    "RNA (2003) 9:180-186

  2. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  3. PubMed ID: 20215419
    MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
    "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
    "Mol Hum Reprod (2010) 16:463-471

  4. PubMed ID: 20413612
    Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
    "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
    "Genes Dev (2010) 24:992-1009