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miRBase |
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Stem-loop sequence cel-mir-357 |
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Accession | MI0000756 (change log) | |||||
Description | Caenorhabditis elegans miR-357 stem-loop | |||||
Gene family | MIPF0000227; mir-357 | |||||
Literature search |
1 open access papers mention cel-mir-357 | |||||
Stem-loop |
a --ug cacca uc a - c a gaaca 5' cgc uacuacu gcgga ccu caacg cug gcau ugcau c ||| ||||||| ||||| ||| ||||| ||| |||| ||||| a 3' gcg augauga cgcuu gga guugc gac cgua augua a c uaaa -caua ga c u - a aaagu |
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Deep sequencing |
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Confidence |
Annotation confidence: not enough data
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Comments |
This miRNA was predicted by computational analysis of C. elegans and C. briggsae, and expression of the mature microRNA confirmed by PCR amplification, cloning and sequencing [1]. The extents of the dominant mature miRNA species are adjusted here in accordance with a large scale cloning and sequencing study [2]. |
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Genome context |
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Clustered miRNAs |
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Database links |
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Mature sequence cel-miR-357-5p |
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Accession | MIMAT0020343 |
Previous IDs | cel-miR-357* |
Sequence |
25 - cccuacaacgcugcgcauaugc - 46 |
Deep sequencing | 6 reads, 2 experiments |
Evidence | experimental; Illumina [5] |
Mature sequence cel-miR-357-3p |
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Accession | MIMAT0000699 |
Previous IDs | cel-miR-357 |
Sequence |
66 - aaaugccagucguugcaggagu - 87 |
Deep sequencing | 1513 reads, 14 experiments |
Evidence | experimental; cloned [1-2], PCR [1], Illumina [3,5], CLIPseq [4] |
Database links |
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Predicted targets |
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References |
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1 |
PMID:15317971
"Patterns of flanking sequence conservation and a characteristic upstream motif for microRNA gene identification"
RNA. 10:1309-1322(2004).
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2 |
PMID:17174894
"Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans"
Cell. 127:1193-1207(2006).
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4 |
PMID:20062054
"Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans"
Nat Struct Mol Biol. 17:173-179(2010).
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5 |