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miRBase |
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Stem-loop sequence cel-mir-359 |
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Accession | MI0000758 (change log) | |||||||
Description | Caenorhabditis elegans miR-359 stem-loop | |||||||
Gene family | MIPF0000371; mir-359 | |||||||
Literature search |
1 open access papers mention cel-mir-359 | |||||||
Stem-loop |
--------aa - uu a - u c a u ccu 5' ug cucc gaa uuucaau cguuagag aa ac cagu acacga c || |||| ||| ||||||| |||||||| || || |||| |||||| a 3' ac gagg cuu gaaguua gcagucuc uu ug guca ugugcu u guugguuuua a -u - a u c - c aac |
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Deep sequencing |
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Confidence |
Annotation confidence: not enough data
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Comments |
This miRNA was predicted by computational analysis of C. elegans and C. briggsae, and expression of the mature microRNA confirmed by PCR amplification, cloning and sequencing [1]. The extents of the dominant mature miRNA species are adjusted here in accordance with a large scale cloning and sequencing study [2]. |
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Genome context |
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Clustered miRNAs |
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Database links |
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Mature sequence cel-miR-359 |
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Accession | MIMAT0000701 |
Sequence |
62 - ucacuggucuuucucugacgaa - 83 |
Deep sequencing | 772 reads, 13 experiments |
Evidence | experimental; cloned [1-2], PCR [1], Illumina [3] |
Database links |
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Predicted targets |
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References |
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1 |
PMID:15317971
"Patterns of flanking sequence conservation and a characteristic upstream motif for microRNA gene identification"
RNA. 10:1309-1322(2004).
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2 |
PMID:17174894
"Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans"
Cell. 127:1193-1207(2006).
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3 |